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Genus Chilomastix
- flagellates parasitic in intestines of vertebrates including humans
Genus Hexamita
- flagellates free-living or parasitic in intestines of birds
Genus Trichomonas
- flagellates parasitic in alimentary or genitourinary tracts of vertebrates and invertebrates including humans
Genus Eimeria
- type genus of the family Eimeriidae; includes serious pathogens
Genus Plasmodium
- type genus of the family Plasmodiidae
Genus Haemoproteus
- type genus of the family Haemoproteidae
Genus Babesia
- type genus of the family Babesiidae
Genus Piroplasma
- type genus of the family Babesiidae